APCI (version 1.0.8)

apci.plot.heatmap: Plot the heatmap for APC-I model

Description

Plot the heatmap to visualize cohort effects estimated by APC-I model.

Usage

apci.plot.heatmap(
  model,
  age,
  period,
  color_map = NULL,
  color_scale = NULL,
  quantile = NULL,
  ...
)

Value

A heatmap visualizing cohort effects estimated by APC-I model.

Arguments

model

A list recording the results from function apci.

age

An object of class character representing the age group index taking on a small number of distinct values in the data. Usually, the vector should be converted to a factor (or the terms of "category" and "enumerated type").

period

An object of class character, similar to the argument of age, representing the time period index in the data.

color_map

A vector, representing the color palettes to be used in the figure. The default setting is greys if color_map is NULL. Alternations, for example, can be c("blue", "yellow"), blues, etc.

color_scale

A vector including two numbers indicating the limit of the values to be plotted. The first number is the minimum value to be visualized and the second is the maximum value to be visualized. If NULL, the algorithm will automatically select the limits from the data (estimation results) to set up the scale.

quantile

A number valued between 0 and 1, representing the desirable percentiles to be used in visualizing the data or model. If NULL, the original scale of the outcome variable will be used.

...

Additional arguments to be passed to the function.

Examples

# load package
library("APCI")
# load data
test_data <- APCI::women9017
test_data$acc <- as.factor(test_data$acc)
test_data$pcc <- as.factor(test_data$pcc)
test_data$educc <- as.factor(test_data$educc)
test_data$educr <- as.factor(test_data$educr)

# fit APC-I model
APC_I <- APCI::apci(outcome = "inlfc",
                    age = "acc",
                    period = "pcc",
                    cohort = "ccc",
                    weight = "wt",
                    data = test_data,dev.test=FALSE,
                    print = TRUE,
                    family = "gaussian")
summary(APC_I)

# plot heatmap
apci.plot.heatmap(model=APC_I,age="acc",period="pcc",first_age = 20,
                  first_period = 1940, interval = 5)