genClones

Find and report genotype clones for qtl objects.

misc

Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).

Julian Taylor

ASMap

Linkage Map Construction using the MSTmap Algorithm

genClones function

<dl> <dt>object</dt>
<dd>An qtl <code>object</code> object with any class structure.</dd><dt>chr</dt>
<dd>A character string of linkage group names.</dd><dt>tol</dt>
<dd>Pairs of genotypes with a proporion of matching alleles above this
tolerance will be returned.</dd><dt>id</dt>
<dd>Character string defining the column of <code>object$pheno</code> containing
the genotype names.</dd></dl>

Arguments

Author

Find and report genotype clones — genClones

<dl>

 <dt>object</dt>
<dd>An qtl <code>object</code> object with any class structure.</dd>

<dt>chr</dt>
<dd>A character string of linkage group names.</dd>

<dt>tol</dt>
<dd>Pairs of genotypes with a proporion of matching alleles above this
tolerance will be returned.</dd>

<dt>id</dt>
<dd>Character string defining the column of <code>object$pheno</code> containing
the genotype names.</dd>

</dl>

genClones: Find and report genotype clones

Description

Usage

Value

Arguments

Author

Details

References

See Also

Examples