Estimates minor allele frequency (MAF)

internal

Presents a series of molecular and genetic routines in the R
environment with the aim of assisting in analytical pipelines before
and after the use of 'asreml' or another library to perform analyses such
as Genomic Selection or Genome-Wide Association Analyses.
Methods and examples are described in Gezan, Oliveira, Galli, and Murray (2022)
<https://asreml.kb.vsni.co.uk/wp-content/uploads/sites/3/ASRgenomics_Manual.pdf>.

Salvador Gezan

ASRgenomics

Complementary Genomic Functions

Darren Murray

Amanda Avelar de Oliveira

Giovanni Galli

VSN International 

maf function

<dl><dt>M</dt>
<dd>The additive \(n \times p\) matrix coded with 0, 1, 2, or <code>NA</code>
(default = <code>NULL</code>).</dd></dl>

Arguments

Estimates minor allele frequency (MAF) — maf

<dl>

<dt>M</dt>
<dd>The additive \(n \times p\) matrix coded with 0, 1, 2, or <code>NA</code>
(default = <code>NULL</code>).</dd>

</dl>

maf: Estimates minor allele frequency (MAF)

Description

Usage

Value

Arguments