geneList1


  Signature genes for 5 oncogenic pathways.


datasets

ASSIGN is a computational tool to evaluate the pathway
deregulation/activation status in individual patient samples.
ASSIGN employs a flexible Bayesian factor analysis approach
that adapts predetermined pathway signatures derived either
from knowledge-based literatures or from perturbation
experiments to the cell-/tissue-specific pathway signatures.
The deregulation/activation level of each context-specific
pathway is quantified to a score, which represents the extent
to which a patient sample encompasses the pathway
deregulation/activation signature.

Ying Shen

ASSIGN

Adaptive Signature Selection and InteGratioN (ASSIGN)

geneList1 function

List with 5 components representing each pathway. 200 signature genes are selected for each pathway. 

Format

Bild et al. (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature, 439, 353-357.

Source

Signature genes for 5 oncogenic pathways.

geneList1: Pathway signature gene sets

Description

Usage

Arguments

Format

Source