perm.tests

A threshold for probabilities below to be considered as zero. Defaults to 1e-12.

lowthresh

Calculates permutation p-values for testing independence in 2x2 case-control tables.

Performs approximate unconditional and permutation testing for
    2x2 contingency tables. Motivated by testing for disease association with rare
    genetic variants in case-control studies. When variants are extremely rare,
    these tests give better control of Type I error than standard tests.

perm.tests: Permutation testing

Description

Usage

Arguments

Value

Examples