Launch the Achilles Heel Shiny app
launchHeelResultsViewer(connectionDetails, cdmDatabaseSchema,
resultsDatabaseSchema, scratchDatabaseSchema = resultsDatabaseSchema,
vocabDatabaseSchema = cdmDatabaseSchema,
tempAchillesPrefix = "tmpach", tempHeelPrefix = "tmpheel",
numThreads = 1, outputFolder)
An R object of type connectionDetails
created using the function createConnectionDetails
in the DatabaseConnector
package.
Fully qualified name of database schema that contains OMOP CDM schema. On SQL Server, this should specifiy both the database and the schema, so for example, on SQL Server, 'cdm_instance.dbo'.
Fully qualified name of database schema that we can fetch final results from. On SQL Server, this should specifiy both the database and the schema, so for example, on SQL Server, 'cdm_results.dbo'.
Fully qualified name of the database schema that will store all of the intermediate scratch tables, so for example, on SQL Server, 'cdm_scratch.dbo'. Must be accessible to/from the cdmDatabaseSchema and the resultsDatabaseSchema. Default is resultsDatabaseSchema. Making this "#" will run Achilles in single-threaded mode and use temporary tables instead of permanent tables.
String name of database schema that contains OMOP Vocabulary. Default is cdmDatabaseSchema. On SQL Server, this should specifiy both the database and the schema, so for example 'results.dbo'.
(OPTIONAL, multi-threaded mode) The prefix to use for the scratch Achilles analyses tables. Default is "tmpach"
(OPTIONAL, multi-threaded mode) The prefix to use for the "temporary" (but actually permanent) Heel tables. Default is "tmpheel"
(OPTIONAL, multi-threaded mode) The number of threads to use to run Achilles in parallel. Default is 1 thread.
Path to store logs and SQL files
Launches a Shiny app that allows the user to explore the Achilles Heel results