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Achilles

Achilles is part of HADES.

Introduction

Automated Characterization of Health Information at Large-Scale Longitudinal Evidence Systems (ACHILLES) Achilles provides descriptive statistics on an OMOP CDM database. ACHILLES currently supports CDM version 5.3 and 5.4.

Features

  • Performs broad database characterization
  • Export feature for ARES
  • Export feature for AchillesWeb (deprecated)

Technology

Achilles is an R package.

System Requirements

Requires R (version 4.0 or higher).

Installation

  1. See the instructions here for configuring your R environment, including RTools and Java.

  2. In R, use the following commands to download and install Achilles:

install.packages("remotes")
remotes::install_github("OHDSI/Achilles")

User Documentation

Documentation can be found on the package website.

Support

  • Developer questions/comments/feedback: OHDSI Forums
  • We use the GitHub issue tracker for all bugs/issues/enhancements

Contributing

Read here how you can contribute to this package.

License

Achilles is licensed under Apache License 2.0

Development

Achilles is being developed in R Studio.

Development status

Achilles is ready for use.

Acknowledgements

  • This project was supported in part through the National Science Foundation grant IIS 1251151.

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Version

Install

install.packages('Achilles')

Monthly Downloads

579

Version

1.7.2

License

Apache License

Maintainer

Frank DeFalco

Last Published

May 11th, 2023

Functions in Achilles (1.7.2)

exportObservationToJson

exportObservationToJson
exportPerformanceToJson

exportPerformanceToJson exportPerformanceToJson
exportMetaToJson

exportMetaToJson
exportDrugToJson

exportDrugToJson
exportPersonToJson

exportPersonToJson
exportProcedureToJson

exportProcedureToJson
exportResultsToCSV

exportResultsToCSV
exportToAres

exportToAres
exportVisitToJson

exportVisitToJson
exportToJson

exportToJson
exportObservationPeriodToJson

exportObservationPeriodToJson
exportVisitDetailToJson

exportVisitDetailToJson
isStationary

Determine whether or not a time series is stationary in the mean
listMissingAnalyses

listMissingAnalyses
tsCompleteYears

Trim a monthly time series object to so that partial years are removed
sumAcrossYears

For a monhtly time series, compute sum and proportion by month across all years
optimizeAtlasCache

Optimize atlas cache
showReportTypes

showReportTypes
performTemporalCharacterization

performTemporalCharacterization
runMissingAnalyses

runMissingAnalyses
exportMeasurementToJson

exportMeasurementToJson
getSeasonalityScore

Get the seasonality score for a given monthly time series
getTemporalData

getTemporalData
getAnalysisDetails

Get all analysis details
exportDrugEraToJson

exportDrugEraToJson
dropAllScratchTables

Drop all possible scratch tables
achilles

achilles
exportDeathToJson

exportDeathToJson
exportDataDensityToJson

exportDataDensityToJson
exportDashboardToJson

exportDashboardToJson
createTimeSeries

createTimeSeries
exportConditionEraToJson

exportConditionEraToJson
exportConditionToJson

exportConditionToJson
createIndices

Create indicies