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ActivePathways (version 1.0.1)

Multivariate Pathway Enrichment Analysis

Description

An integrative method of analyzing multi omics data that conducts enrichment analysis of annotated gene sets. 'ActivePathways' uses a statistical data fusion approach, rationalizes contributing evidence and highlights associated genes, improving systems-level understanding of cellular organization in health and disease.

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Version

Install

install.packages('ActivePathways')

Monthly Downloads

558

Version

1.0.1

License

GPL-3

Maintainer

Helen Zhu

Last Published

May 4th, 2019

Functions in ActivePathways (1.0.1)

brownsMethod

Merge p-values using Brown's method
makeBackground

Make a background list of genes
orderedHypergeometric

Ordered Hypergeometric Test
merge_p_values

Merge a list or matrix of p-values
prepareCytoscape

Prepare files for building an Enrichment Map in Cytoscape
hypergeometric

Hypergemoetric Test
enrichmentAnalysis

Perform Gene Set Enrichment Analysis on an ordered list of genes
ActivePathways

ActivePathways
GMT

Read and Write GMT files
columnSignificance

Determine which pathways are found to be significant using each column individually