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AffyRNADegradation (version 1.18.0)

Analyze and correct probe positional bias in microarray data due to RNA degradation

Description

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

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Version

Version

1.18.0

License

GPL-2

Maintainer

Mario Fasold

Last Published

February 15th, 2017

Functions in AffyRNADegradation (1.18.0)

RNADegradation

Compute degradation parameters and correct probe intensities
GetTongs

Generate and visualize the tongs plot
AffyRNADegradation

AffyRNADegradation: analyze and correct RNA degradation effects
AffyDegradationBatch-class

Class AffyDegradationBatch