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AffyTiling (version 1.30.0)

Easy extraction of individual probes in Affymetrix tiling arrays

Description

This package provides easy, fast functions for the extraction and annotation of individual probes from Affymetrix tiling arrays.

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Version

Version

1.30.0

License

GPL (>= 2)

Maintainer

Charles G Danko

Last Published

February 15th, 2017

Functions in AffyTiling (1.30.0)

AnalyzeTilingCelFiles

Background correction and RNA normalization for CEL files from an Affymetrix tiling array.
KG

Position of known genes in the first 2 Mb of human chromosome 1-3.
AssociateWithGenes

Associates a vector of probe positions with the nearest input transcription start site.
KnownGenes

Sample intensities for human promoter tiling array.
TilingCelFiles2Probesets

Background correction and RNA normalization for CEL files from an Affymetrix tiling array.
AssociateWithInterval

Returns index of association between a probe and a set of genomic intervals.
parseBPMAP

Returns information from a BPMAP file for select probes in an Affymetrix tiling array.
Einter

Sample intensities for human promoter tiling array.