AgiMicroRna (version 2.22.0)

hierclusMicroRna: Hierarchical clustering

Description

Hierarchical cluster of samples using the 'hclust' function

Usage

hierclusMicroRna(object, GErep, methdis, methclu,sel, size)

Arguments

object

An expression Matrix

GErep

Numerical vector that relates each sample with its experimental condition

methdis

the distance measure to be used. Options are 'euclidean' and 'pearson'. see 'dist' function

methclu

the agglomeration method to be used by the 'hclust' function

sel

logical, if TRUE selects the 'size' highest variance genes for the plot

size

selects the 'size' highest variance genes for the plot if 'sel=TRUE'

See Also

hclust,dist

Examples

 	data(targets.micro)
        data(ddPROC)

	hierclusMicroRna(ddPROC$TGS,GErep,
		methdis="euclidean",
        	methclu="complete",
		sel=FALSE,100)