plot_dissimilarity_matrix

an object of type "pairwise alignment comparison" (typically the summary file generated by compare_alignments)

display


A heatmap plot of the dissimilarity matrix of two multiple sequence alignments


Methods for comparing two alternative multiple
sequence alignments (MSAs) to determine whether they align homologous residues in
the same columns as one another. It then classifies similarities and differences
into conserved gaps, conserved sequence, merges, splits or shifts of one MSA relative
to the other. Summarising these categories for each MSA column yields information
on which sequence regions are agreed upon my both MSAs, and which differ. Several
plotting functions enable easily visualisation of the comparison data for analysis.

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plot_dissimilarity_matrix: A heatmap plot of the dissimilarity matrix of two multiple sequence alignments

Description

Usage

Arguments

Examples