Summarize information for individuals of each origin (starters, supplementals,
locals, immigrants) simulated by aRetain. Must be run after
aRetain is run with trackall = TRUE.
indiv.summary(adata, genlength, alpha=0.05)list of output from aRetain
mean age of simulated individuals (breeding pairs only), as
returned by census.summary (use the MeanAge value where it stabilizes
after recovering from any founder age effects)
confidence level e.g. 0.05 for 95% intervals
A matrix with 4 rows, one for each origin (starter, supplemental, local, immigrant) and the columns are summary variables:
total number of individuals from each origin, summed within each replicate and then averaged across replicates
probability of each individual breeding (proportion that bred)
lower confidence limit for pbreed
upper confidence limit for pbreed
mean # years bred per individual (including those that never bred)
mean # of years bred per individual (that bred at least once)
mean lifespan in the population
mean # of individuals that bred each generation
mean # of total lifetime matings, across individuals
Weiser, E.L., Grueber, C. E., and I. G. Jamieson. 2012. AlleleRetain: A program to assess management options for conserving allelic diversity in small, isolated populations. Molecular Ecology Resources 12:1161-1167.