AllelicImbalance (version 1.6.2)

ReferenceBias-class: ReferenceBias class

Description

Object that holds Reference bias information

Usage

refbiasByAnnotation(x, ...)
"refbiasByAnnotation"(x, TxDb)
"frequency"(x, return.class = "matrix", strand = "*")
hetPerSample(x, ...)
"hetPerSample"(x, return.class = "vector", strand = "*")
hetPerSnp(x, ...)
"hetPerSnp"(x, return.class = "vector", strand = "*")

Arguments

x

ReferenceBias object

...

pass arguments to internal functions

TxDb

A transcriptDb object

return.class

class to return

strand

'+','-' or '*'

Value

An object of class ReferenceBias storing reference fractions.

Constructor

refBias(x = ASEset)

Arguments:

x

an ASEset object

Details

Reference bias-class contain annotated fractions of the reference allele

Shortly the ReferenceBias-class most prominent purpose is quikly to be able to dispatch on methods like, 'plot', 'summary' and similar.

Examples

data(ASEset)
a <- ASEset
rb <- RBias(a)