AllelicImbalance (version 1.6.2)

randomRef: Random ref allele from genotype

Description

Create a vector of random reference alleles

Usage

randomRef(x, ...)
"randomRef"(x, inferGenotypes = FALSE)

Arguments

x

ASEset object

...

internal arguments

inferGenotypes

infer genotypes from count matrix

Details

Randomly shuffles which of the two alleles for each genotype that is indicated as reference allele.

Examples

#load example data
data(ASEset.sim)
a <- ASEset.sim

mcols(a)[["ref"]] <- randomRef(a, inferGenotypes=TRUE)