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AlphaPart (version 0.9.3)

Partition/Decomposition of Breeding Values by Paths of Information

Description

A software that implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes. The partitioning method is described in Garcia-Cortes et al. (2008) . The package includes the main function AlphaPart for partitioning breeding values and auxiliary functions for manipulating data and summarizing, visualizing, and saving results.

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Version

Install

install.packages('AlphaPart')

Monthly Downloads

434

Version

0.9.3

License

GPL (>= 2)

Maintainer

Gregor Gorjanc

Last Published

March 10th, 2022

Functions in AlphaPart (0.9.3)

pedFixBirthYear

pedFixBirthYear.R
AlphaPartSubset

AlphaPartSubset.R
AlphaPart

AlphaPart.R
plot.summaryAlphaPart

A function to plot summary of partitioned breeding values.
sEBV

Scale EBVs for objects of the class summaryAlphaPart.
print.AlphaPart

Print method for the output of AlphaPart function.
savePlot

Save plot method for AlphaPart
pedSetBase

pedSetBase.R
print.summaryAlphaPart

Print method for objects of the class summaryAlphaPart.
print.plotSummaryAlphaPart

Print a plot generate by the function plotSummaryAlphaPart
AlphaPart.ped

Sample pedigree for partition.
getScale

Get scale information
write.csv

write.csv.R
centerPop

Calculate parent average for base population.
savePlot.plotSummaryAlphaPart

Save plot objects on the disk for permanent storage. Function savePlot from the grDevices package works for current page on graphical device. This is an attempt to make this function generic so that one can define savePlot methods for particular needs.
summary.AlphaPart

A function to summarize AlphaPart object.
AlphaPartSum

AlphaPartSum.R