AlphaSimR (version 0.10.0)

SimParam_setCorE: Set correlated error variance

Description

Defines a correlation structure for default error variances. You must call SimParam_setVarE first to define the default error variances.

Arguments

corE

a correlation matrix for the error variances

Usage

SP$setCorE(corE)

Examples

# NOT RUN {
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10, mean=c(0,0), var=c(1,1), corA=diag(2))
SP$setVarE(varE=c(1,1))
E = 0.5*diag(2)+0.5 #Positively correlated error
SP$setCorE(E)

# }