AlphaSimR (version 0.10.0)

SimParam_setTrackRec: Set recombination tracking

Description

Sets recombination tracking for the simulation. By default recombination tracking is turned off. When turned on recombination tracking will also turn on pedigree tracking. Recombination tracking keeps records of all individuals created, except those created by hybridCross, because their pedigree is not tracked.

Arguments

isTrackRec

should recombination tracking be on.

force

should the check for a running simulation be ignored. Only set to TRUE if you know what you are doing.

Usage

SimParam$setTrackRec(isTrackRec, force = FALSE)

Examples

# NOT RUN {
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$setTrackRec(TRUE)

# }