AlphaSimR (version 0.10.0)

getQtlMap: Get QTL genetic map

Description

Retrieves the genetic map for the QTL of a given trait.

Usage

getQtlMap(trait = 1, gender = "A", simParam = NULL)

Arguments

trait

an integer for the

gender

determines which gender specific map is returned. Options are "A" for average map, "F" for female map, and "M" for male map. All options are equivalent if not using gender specific maps.

simParam

an object of SimParam

Value

Returns a data.frame for the SNP map.

Examples

# NOT RUN {
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(5)

#Pull SNP map
getQtlMap(trait=1, simParam=SP)

# }