AlphaSimR (version 0.10.0)

pullSegSiteGeno: Pull seg site genotypes

Description

Retrieves genotype data for all segregating sites

Usage

pullSegSiteGeno(pop, chr = NULL, simParam = NULL)

Arguments

pop

an object of Pop-class or RawPop-class

chr

a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved.

simParam

an object of SimParam

Value

Returns a matrix of genotypes

Examples

# NOT RUN {
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
SP$addSnpChip(5)

#Create population
pop = newPop(founderPop, simParam=SP)
pullSegSiteGeno(pop, simParam=SP)

# }