Data engineering and BI courses are free!
Retrieves SNP haplotype data
pullSnpHaplo(
pop,
snpChip = 1,
haplo = "all",
chr = NULL,
asRaw = FALSE,
simParam = NULL
)Returns a matrix of SNP haplotypes.
an object of Pop-class
an integer. Indicates which SNP chip's haplotypes to retrieve.
either "all" for all haplotypes or an integer for a single set of haplotypes. Use a value of 1 for female haplotypes and a value of 2 for male haplotypes in diploids.
a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved.
return in raw (byte) format
an object of SimParam
#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=15)
#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)
SP$addSnpChip(5)
#Create population
pop = newPop(founderPop, simParam=SP)
pullSnpHaplo(pop, simParam=SP)
Run the code above in your browser using DataLab