AmpGram (version 1.0)

pred2df: Convert predictions to data.frame Return predictions as data.frame

Description

Convert predictions to data.frame Return predictions as data.frame

Usage

pred2df(x)

Arguments

x

results of prediction as produced by predict.ampgram_model

Value

a data.frame with two columns and number of rows corresponding to the number of peptides/proteins in the results of prediction. Columns contain following information:

seq_name

Name of an analyzed sequence

probability

Probability that a protein/peptide possesses antimicrobial activity. It assumes values from 0 (non-AMP) to 1 (AMP).

Row names contain sequence name and decision if a peptide/protein is classified as AMP (TRUE) or non-AMP (FALSE).

Examples

# NOT RUN {
data(AmpGram_predictions)
pred2df(AmpGram_predictions)
# }