AmpliconDuo (version 1.1)

ampliconfreqs: SSU Amplicon Frequencies Of Different Sampling Sites (Short Version)

Description

A data frame with 16 amplicon data sets taken from 8 different sampling sites. A reduced version (frequencies of 2500 amplicons) of the ampliconfreqs.long data provided with this package. Samples from each sampling site were sequenced twice, corresponding to sets A and B (e.g. column FU25.A and FU25.B). Names of the sampling sites are specified in the data site.f.

Usage

data(ampliconfreqs)

Format

A data frame with 80903 observations on the following 16 variables.

FU25.A

a numeric vector

FU25.B

a numeric vector

FU28.A

a numeric vector

FU28.B

a numeric vector

FU31.A

a numeric vector

FU31.B

a numeric vector

FU31.C

a numeric vector

FU31.D

a numeric vector

FU34.A

a numeric vector

FU34.B

a numeric vector

FU37.A

a numeric vector

FU37.B

a numeric vector

UniPond.A

a numeric vector

UniPond.B

a numeric vector

BogSoil.A

a numeric vector

BogSoil.B

a numeric vector

References

Lange A, Jost S, Heider D, Bock C, Budeus B, Schilling E, Strittmatter A, Boenigk J, Hoffmann D: AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities. (PLoS One. 2015 Nov 2;10(11))

Examples

data(ampliconfreqs)
data(site.f)
ampliconduo.a <- ampliconduo(ampliconfreqs[,1:4], sample.names = site.f[1:2])