AnaCoDa (version 0.1.0)

getTrace: extracts an object of traces from a parameter object.

Description

extracts an object of traces from a parameter object.

Usage

getTrace(parameter)

Arguments

parameter

A Parameter object that corresponds to one of the model types.

Value

trace Returns an object of type Trace extracted from the given parameter object

Examples

Run this code
# NOT RUN {
 
genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")

genome <- initializeGenomeObject(file = genome_file)
sphi_init <- c(1,1)
numMixtures <- 2
geneAssignment <- sample(1:2, length(genome), replace = TRUE) # random assignment to mixtures
parameter <- initializeParameterObject(genome = genome, sphi = sphi_init, 
                                       num.mixtures = numMixtures, 
                                       gene.assignment = geneAssignment, 
                                       mixture.definition = "allUnique")

trace <- getTrace(parameter) # empty trace object since no MCMC was perfomed

# }

Run the code above in your browser using DataCamp Workspace