Learn R Programming

AneuFinder (version 1.0.3)

hotspotter: Find hotspots of genomic events

Description

Find hotspots of genomic events by using kernel density estimation.

Usage

hotspotter(gr.list, bw, pval = 1e-08)

Arguments

gr.list
A list with GRanges object containing the coordinates of the genomic events.
bw
Bandwidth used for kernel density estimation (see density).
pval
P-value cutoff for hotspots.

Value

A GRanges object containing coordinates of hotspots with p-values.