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AnimalAPD (version 1.0.0)

Compare Activity Patterns with Activity Probability Density (APD)

Description

Calculation and analyses of Activity Probability Density (APD) for comparing animal activity patterns with automated Bayesian model selection using 'STAN'. See Campbell et al. (in press) "A new approach to comparing animal temporal activity: a more informative, robust, and flexible method that controls for nested data, quantifies relationship asymmetries, and allows linear modelling of temporal behaviour."

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Version

Install

install.packages('AnimalAPD')

Monthly Downloads

1

Version

1.0.0

License

GPL (>= 2)

Maintainer

Liz AD Campbell

Last Published

March 18th, 2021

Functions in AnimalAPD (1.0.0)

boarexample

Camera Trap Observations of wild boar
plotAPDcorr

Plot APDcorr Posterior Samples and Predicted Effects
exampleAPDRE

Executable Example of APDRE Function
plotAPDavg

Plot APDavg Posterior Samples
plotAPDcv

Plot APDcv Posterior Samples
APDraw

Calculate Raw APD Values
exampleAPDREcorr

Executable Example of APDREcorr Function
wolfexample

Camera Trap Observations of African golden wolves
APDREcorr

APDREcorr Correlations between Activity Patterns using APD GLMMs
APDRE

Activity Probability Density Controlling for Random Effects