AnimalSequences (version 0.2.0)

association_metrics: Calculate Association Metrics for Sequences

Description

This function calculates various association metrics for elements in a sequence, such as Pointwise Mutual Information (PMI), normalized PMI, attraction, reliance, Delta P, z-score, t-score, Chi-squared, Jaccard coefficient, Dice coefficient, log odds ratio, and geometric mean.

Usage

association_metrics(sequences)

Value

A data frame with the calculated association metrics for each dyad (pair of elements).

Arguments

sequences

A character vector of sequences to analyze.

Examples

# Example usage:
sequences <- c("A B C", "A B", "A C", "B C", "A B C D")
result <- association_metrics(sequences)
print(result)