AnimalSequences (version 0.2.0)

element_covariate: Calculate Element-Covariate Conditional Probabilities

Description

This function calculates the conditional probability of each element given each covariate and performs permutation tests to compute the expected conditional probabilities and p-values.

Usage

element_covariate(
  sequences_long,
  element = "element",
  covariate = "covariate",
  n_permutations = 1000
)

Value

A data frame with the calculated probabilities, expected probabilities, and p-values for each element-covariate pair.

Arguments

sequences_long

A data frame containing the sequences, with columns for elements and covariates.

element

A string specifying the column name for elements in the sequences data frame.

covariate

A string specifying the column name for covariates in the sequences data frame.

n_permutations

An integer specifying the number of permutations for the bootstrapping process.

Examples

# Example usage:
sequences_long <- data.frame(
  element = rep(letters[1:3], each = 4),
  covariate = rep(letters[4:7], times = 3)
)
result <- element_covariate(sequences_long,
                            element = 'element',
                            covariate = 'covariate',
                            n_permutations = 50)
print(result)