rDNAterms

A data frame containing search terms for ribosomal RNA loci. Can be subset for loci of 
 interest. Columns are as follows and users should follow the column format if they wish to
 add search terms using the MergeSearchTerms function:

datasets

Extraction of subsequences into FASTA files from GenBank annotations where gene names may vary among accessions. Borstein & O'Meara (2018) <doi:10.7717/peerj.5179>.

Samuel Borstein

AnnotationBustR

Extract Subsequences from GenBank Annotations

rDNAterms function

A data frame of of 7 rows and 3 columns<ul>
<li>Locus: Locus name, FASTA files will be written with this name</li>
<li>Type: Type of subsequence, either rRNA or misc_RNA</li>
<li>Name:Name of synonym for a locus to search for</li>
</ul>

rDNAterms: Ribosomal DNA (rDNA) Search Terms

Description

Usage

Arguments

Format

See Also