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AnnotationDbi (version 1.34.4)
Annotation Database Interface
Description
Provides user interface and database connection code for annotation data packages using SQLite data storage.
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Version
1.34.4
1.34.3
1.32.0
1.30.1
1.28.2
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Version
1.34.4
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in AnnotationDbi (1.34.4)
Search functions
AnnDbObj-objects
AnnDbObj objects
Bimap-direction
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys
AnnDbPkg-checker
Check the SQL data contained in an SQLite-based annotation package
Bimap-envirAPI
Environment-like API for Bimap objects
AnnotationDbi internals
AnnotationDbi internals
AnnotationDb-objects
AnnotationDb objects and their progeny, methods etc.
Bimap-toTable
Methods for manipulating a Bimap object in a data-frame style
toggleProbes
Methods for getting/setting the filters on a Bimap object
Bimap-keys
Methods for manipulating the keys of a Bimap object
Bimap
Bimap objects and the Bimap interface
GOID
Descriptions of available values for
columns
and
keytypes
for GO.db.
make_eg_to_go_map
Create GO to Entrez Gene maps for chip-based packages
GOFrame
GOFrame and GOAllFrame objects
inpIDMapper
Convenience functions for mapping IDs through an appropriate set of annotation packages
createSimpleBimap
Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi
ACCNUM
Descriptions of available values for
columns
and
keytypes
.
BimapFormatting
Formatting a Bimap as a list or character vector
GOTerms-class
Class "GOTerms"
KEGGFrame
KEGGFrame objects
makeGOGraph
A convenience function to generate graphs based on the GO.db package
toSQLStringSet
Convert a vector to a quoted string for use as a SQL value list
print.probetable
Print method for probetable objects
HOMO_SAPIENS
Descriptions of available values for
columns
and
keytypes
for inparanpoid packages.
unlist2
A replacement for unlist() that does not mangle the names