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AnnotationForge (version 1.14.2)

Code for Building Annotation Database Packages

Description

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

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Version

Version

1.14.2

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in AnnotationForge (1.14.2)

getProbeDataAffy

Read a data file describing the probe sequences on an Affymetrix genechip
wrapBaseDBPackages

Wrap up all the Base Databases into Packages for distribution
makeChipPackage

Making a chip package from annotations available from data.frame of probes mapped to gene IDs and an existing org package.
AnnDbPkg-maker

Creates an SQLite-based annotation package
makeInpDb

Builds an individual DB from online files at inparanoid that is in turn meant for generating Inparanoid 8 based objects.
populateDB

Populates an SQLite DB with and produces a schema definition
makeDBPackage

Creates a sqlite database, and then makes an annotation package with it
makeOrgPackageFromNCBI

Making an organism package from annotations available from NCBI.
available.db0pkgs

available.db0pkgs
generateSeqnames.db

Generates the seqnames.db package and database
getProbeData_1lq

Read a 1lq file for an Affymetrix genechip
makeOrgPackage

Making an organism package from annotations available from a set of named data.frames.
makeProbePackage

Make a package with probe sequence related data for microarrays