class:AnnotationHubResource

AnnotationHubResource-class

getHub

getHub,AnnotationHubResource-method

hubCache,AnnotationHubResource-method

hubUrl,AnnotationHubResource-method

classes

methods

AnnotationHubResource-objects

This package provides a client for the Bioconductor
AnnotationHub web resource. The AnnotationHub web resource
provides a central location where genomic files (e.g., VCF, bed,
wig) and other resources from standard locations (e.g., UCSC,
Ensembl) can be discovered. The resource includes metadata about
each resource, e.g., a textual description, tags, and date of
modification. The client creates and manages a local cache of
files retrieved by the user, helping with quick and reproducible
access.

Martin Morgan

AnnotationHub

Client to access AnnotationHub resources

AnnotationHubResource-objects function

In the code snippets below, <code>x</code> and <code>object</code> are
  AnnotationHubResource objects. <dl>
    <dt></dt><dd>
      <code>getHub(x)</code>:
      Gets the AnnotationHub from the hub slot.
    </dd> <dt></dt><dd>
      <code>getCache(x)</code>:
      Gets the location of the AnnotationHub cache from the AnnotationHub
      object in the hub slot.
    </dd> <dt></dt><dd>
      <code>getUrl(x)</code>:
      Gets the location of the AnnotationHub production server from the 
      AnnotationHub object in the hub slot.
    </dd> </dl> 

Accessors

AnnotationHubResource objects and their related methods and functions

AnnotationHubResource-objects: AnnotationHubResource objects and their related methods and functions

Description

Arguments

Accessors

Examples