Usage
updateAllResources(ahroot, BiocVersion,
preparerClasses = getImportPreparerClasses(),
existingResources = getExistingResources(BiocVersion),
insert = TRUE, downloadIfExists = FALSE,
insertOnlyIfRDataExists = TRUE, metadataOnly = FALSE,
metadataFilter = NULL, parallelCores = NULL)
Arguments
ahroot
The root directory for AnnotationHub resources.
BiocVersion
The Bioconductor version (or versions) whose repositories are to be updated.
preparerClasses
A list of subclasses of ImportPreparer to run.
existingResources
Don't update these existing resources. If this is an empty list, all resources
are updated.
insert
Update metadata records in MongoDB?
downloadIfExists
If the file pointed to by a metadata resource already exists, do we still
want to download it?
insertOnlyIfRDataExists
If TRUE, metadata is inserted into MongoDB only if the corresponding file
resource (usually an .RData file) exists.
metadataOnly
Don't retrieve the data resource, just return the metadata.
metadataFilter
A function, suitable for passing to Filter, to apply
to the metadata items. parallelCores
Number of cores to use for parallel downloading of resources. If NULL,
downloading is done serially.