igraph_to_phylo

Converts an igraph network into a phylogenetic tree as a phylo object.

The generated wealth of immune repertoire sequencing data
requires software to investigate and quantify inter- and
intra-antibody repertoire evolution to uncover how B cells evolve
during immune responses. Here, we present 'AntibodyForests', a software
to investigate and quantify inter- and intra-antibody repertoire
evolution.

Alexander Yermanos

AntibodyForests

Delineating Inter- And Intra-Antibody Repertoire Evolution

Daphne van Ginneken

Valentijn Tromp

Tudor-Stefan Cotet

igraph_to_phylo function

<dl><dt>tree</dt>
<dd>igraph object</dd>
<dt>solve_multichotomies</dt>
<dd>boolean - whether to remove multichotomies in the resulting phylogenetic tree using ape::multi2di</dd></dl>

Arguments

Converts an igraph network into a phylogenetic tree as a phylo object. — igraph_to_phylo

<dl>

<dt>tree</dt>
<dd>igraph object</dd>


<dt>solve_multichotomies</dt>
<dd>boolean - whether to remove multichotomies in the resulting phylogenetic tree using ape::multi2di</dd>

</dl>

igraph_to_phylo: Converts an igraph network into a phylogenetic tree as a phylo object.

Description

Usage

Value

Arguments

Examples