AntibodyTiters (version 0.1.24)

groupAttribABT: Grouping of patients by scores.

Description

Addition of a new attribute that categorizes patients in specified groups to an ABT class object.

Usage

groupAttribABT(objName = "inData", sourceAttrib = "Age", 
    newAttribName = "AgeGroup", groupNames = c("young", "middle", "elderly"),
    groupLimmits = list(c(0, 39), c(40, 64), c(65, 200)))

Arguments

objName

a character specifying the name of an ABT class object produced by readABT.

sourceAttrib

a character specifying the name of source attribute. The contents of this attribute must be integer of numeric.

newAttribName

a character specifying the name of the new attribute.

groupNames

a character vector specifying the names of categories.

groupLimmits

a list of two value integers specifying the lower and upper limmits of scores. The order of values in this list must correspond to the order of values in groupNames

Value

an ABT class object

Examples

# NOT RUN {
inData <- readABT(fileName = system.file("extdata","toy.xlsx",package="AntibodyTiters"))
inDataA <- groupAttribABT(objName = "inData", sourceAttrib = "Age", 
    newAttribName = "AgeGroup", groupNames = c("young", "middle", "elderly"),
    groupLimmits = list(c(0, 39), c(40, 64), c(65, 200)))
plotAllABT("inDataA", lineAttrib = "AgeGroup", addPoints = TRUE, savePDF = FALSE, 
    orderOfCategories = c("young", "middle", "elderly"), type = "weeks")
plotAllABT("inDataA", lineAttrib = "AgeGroup", addPoints = TRUE, savePDF = FALSE, 
    orderOfCategories = c("young", "middle", "elderly"), type = "M1", geometricMean = TRUE)
# }