ArchR (version 1.0.0)

getVarDeviations: Get Variable Deviations across cells in ArchRProject.

Description

This function will rank the variability of the deviations computed by ArchR and label the top variable annotations.

Usage

getVarDeviations(ArchRProj = NULL, name = "MotifMatrix", plot = TRUE, n = 25)

Arguments

ArchRProj

An ArchRProject object.

name

The name of the DeviationsMatrix object stored in the ArchRProject. See addDeviationsMatrix().

plot

A boolean value indicating whether the ranked variability should be plotted for each peakAnnotation in DeviationsMatrix.

n

The number of annotations to label with ggrepel.