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ArchaeoPhases (version 1.4.5)

Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'

Description

Provides a list of functions for the statistical analysis of archaeological dates and groups of dates (see for a description). It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior distribution of a series of dates. Such output can be simulated by different applications as for instance 'ChronoModel' (see ), 'Oxcal' (see ) or 'BCal' (see ). The only requirement is to have a csv file containing a sample from the posterior distribution.

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Version

Install

install.packages('ArchaeoPhases')

Monthly Downloads

262

Version

1.4.5

License

GPL-3

Maintainer

Anne Philippe

Last Published

May 29th, 2020

Functions in ArchaeoPhases (1.4.5)

Events

Events
CredibleInterval

Bayesian credible interval
DatesHiatus

Test for the existence of a hiatus between two parameters
MultiPhaseTimeRange

Phase Time Range for multiple groups
PhaseTimeRange

Phase Time Range
Phases

Phases
coda.mcmc

Create a mcmc.list object for CODA users.
PhasesTransition

Transition range between two successive phases (for phases in temporal order constraint)
MultiPhasesGap

Gap/Hiatus between a succession of groups (for groups in temporal order constraint)
KADatesChronoModel

Ksar Akil chronology build with ChronoModel software. Dates part.
MarginalStatistics

Marginal summary statistics
app_ArchaeoPhases

Run ArchaeoPhases shiny apps
MarginalProba

Bayesian test for anteriority / posteriority between two parameters
KADatesOxcal

Ksar Akil chronology build with Oxcal software
MultiPhasesTransition

Transition range for a succession of groups (for groups in temporal order constraint)
PhasesGap

Gap or Hiatus between two successive phases (for phases in temporal order constraint)
ImportCSV.BCal

Importing a BCal csv file
MultiCredibleInterval

Bayesian credible intervals for a series of dates
ImportCSV

Importing a CSV file containing the output of the MCMC algorithm
MultiDatesPlot

Plot of the endpoints of credible intervals or HPD intervals of a series of dates
MultiPhasePlot

Plot of the marginal posterior densities of several groups
MultiSuccessionPlot

Successive Phases Density Plots (for groups in temporal order constraint)
TempoPlot

Plot of the occurence of events
TempoActivityPlot

Plot of the activity of events
MultiHPD

Bayesian highest posterior density regions for a series of MCMC chains
SuccessionPlot

Density Plots of two successive groups (for groups in temporal order constraint)
PhaseDurationPlot

Plot of the duration of a group
OccurrencePlot

Plot of the occurence of events
ArchaeoPhases

ArchaeoPhases: Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'
CreateMinMaxGroup

Constructing the minimum and the maximum for a group of dates(phase)
KAPhasesChronoModel

Ksar Akil chronology build with ChronoModel software. Phases part.
PhasePlot

Plot of the characteristics of a group of dates
MarginalPlot

Plot of a marginal posterior density
PhaseStatistics

Summary statistics of a phase
Fishpond

Polynesian fishpond site on the island of Oahu, Hawaii.