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ArrayExpress (version 1.32.0)
Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Description
Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
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Version
Version
1.32.0
1.30.0
1.28.1
1.26.0
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Version
1.32.0
License
Artistic-2.0
Maintainer
Ugis Sarkans
Last Published
January 1st, 1970
Functions in ArrayExpress (1.32.0)
Search functions
getAE
Download MAGE-TAB files from ArrayExpress in a specified directory
isRCloud
Check the code is running on R-Cloud
getcolraw
Return the possible column names from raw MAGE-TAB files
procset
Convert processed MAGE-TAB files into a Bioconductor object
extract.zip
Unzip archives in a specified directory
ArrayExpressHTS
ExpressionSet for RNA-Seq experiment submitted in ArrayExpress and ENA
processing-options
Functions to work with ArrayExpressHTS processing options
ae2bioc
Convert MAGE-TAB files from raw data into a Bioconductor object
ArrayExpressHTSFastQ
ExpressionSet for RNA-Seq raw data files
getcolproc
Return the possible column names from processed MAGE-TAB files
package-options
Functions to work with package level options
prepareReference
Prepare reference data for the RNA-Seq Pipeline
prepareAnnotation
Prepare annotation data for the RNA-Seq Pipeline
queryAE
XML query of the ArrayExpress repository
ArrayExpress
R objects from ArrayExpress database