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ArrayExpress (version 1.32.0)

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Description

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

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Version

Version

1.32.0

License

Artistic-2.0

Maintainer

Ugis Sarkans

Last Published

February 15th, 2017

Functions in ArrayExpress (1.32.0)

getAE

Download MAGE-TAB files from ArrayExpress in a specified directory
isRCloud

Check the code is running on R-Cloud
getcolraw

Return the possible column names from raw MAGE-TAB files
procset

Convert processed MAGE-TAB files into a Bioconductor object
extract.zip

Unzip archives in a specified directory
ArrayExpressHTS

ExpressionSet for RNA-Seq experiment submitted in ArrayExpress and ENA
processing-options

Functions to work with ArrayExpressHTS processing options
ae2bioc

Convert MAGE-TAB files from raw data into a Bioconductor object
ArrayExpressHTSFastQ

ExpressionSet for RNA-Seq raw data files
getcolproc

Return the possible column names from processed MAGE-TAB files
package-options

Functions to work with package level options
prepareReference

Prepare reference data for the RNA-Seq Pipeline
prepareAnnotation

Prepare annotation data for the RNA-Seq Pipeline
queryAE

XML query of the ArrayExpress repository
ArrayExpress

R objects from ArrayExpress database