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ArrayExpressHTS (version 1.22.1)
ArrayExpress High Throughput Sequencing Processing Pipeline
Description
RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets
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Link to current version
Version
Version
1.22.1
1.22.0
1.20.0
1.18.0
1.16.0
Version
1.22.1
License
Artistic License 2.0
Maintainer
Angela Goncalves
Last Published
February 15th, 2017
Functions in ArrayExpressHTS (1.22.1)
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ArrayExpressHTS
ExpressionSet for RNA-Seq experiment submitted in ArrayExpress and ENA
ArrayExpressHTSFastQ
ExpressionSet for RNA-Seq raw data files
prepareAnnotation
Prepare annotation data for the RNA-Seq Pipeline
prepareReference
Prepare reference data for the RNA-Seq Pipeline
processing-options
Functions to work with ArrayExpressHTS processing options
package-options
Functions to work with package level options
isRCloud
Check the code is running on R-Cloud