ArrayTools (version 1.32.0)

createIndex: Creating an HTML index file

Description

This HTML index file will link all the ouputted result, including Quality Assessment Report, differentially expressed genes, etc...

Usage

createIndex(..., mydir = getwd(), index.file = "index.html", createHeader = NULL)

Arguments

...

regressionResults or interactionResult

mydir

the directory to contain the index file

index.file

name of the index file

createHeader

If want to want to create an Header, such as your name, company names, etc...

Value

creating an HTML index-file in your directory

Examples

data(eSetExample)
design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment")
contrast<- new("contrastMatrix", design.matrix = design, 
    compare1 = "Treated", compare2 = "Control")
result<- regress(eSetExample, contrast)
sigResult<- selectSigGene(result, fc.value=log2(2)) 
## Not run: Output2HTML(sigResult)

design.int<- new("designMatrix", target=pData(eSetExample), covariates = c("Treatment", "Group"),
    intIndex = c(1, 2))
contrast.int<- new("contrastMatrix", design.matrix = design.int, interaction=TRUE)
result.int<- regress(eSetExample, contrast.int)
sigResult.int <- selectSigGene(result.int)
intResult <- postInteraction(eSetExample, sigResult.int, mainVar ="Treatment",
   compare1 = "Treated", compare2 = "Control")
sigResultInt <- selectSigGeneInt(intResult)
## Not run: Output2HTML(sigResultInt)

## Not run: createIndex(sigResult, sigResultInt, createHeader = c("Arthur Li", "COH"))