ArrayTools (version 1.32.0)

createIngenuityFile: A Wrapper Function to Create Files for Ingenuity Analysis

Description

A Wrapper Function to Create Files for Ingenuity Analysis

Usage

createIngenuityFile(..., mydir = getwd(), eSet, filename = "IngenuityFile")

Arguments

...

a list of regressResult class

mydir

the directory where you would like to store the file

eSet

an ExpressionSet

filename

file name

Value

create an Ingenuity upload file

Details

This function enable to create the ingenuity upload file based on a list of regressResult

References

http://www.ingenuity.com/

Examples

data(eSetExample)
design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment")
contrast<- new("contrastMatrix", design.matrix = design, 
    compare1 = "Treated", compare2 = "Control")
result<- regress(eSetExample, contrast)
## Not run: createIngenuityFile(result, eSet = eSetExample)