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AssotesteR (version 0.1-10)
Statistical Tests for Genetic Association Studies
Description
R package with statistical tests and methods for genetic association studies with emphasis on rare variants and binary (dichotomous) traits
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Version
Version
0.1-10
0.1-7
0.1-1
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Install
install.packages('AssotesteR')
Monthly Downloads
38
Version
0.1-10
License
GPL (>= 3)
Maintainer
Gaston Sanchez
Last Published
December 18th, 2013
Functions in AssotesteR (0.1-10)
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CMAT
CMAT: Cumulative Minor Allele Test
BST
BST: Bayesian Score Test
SEQSUM
SEQSUM: Sequential Sum Score Test
VT
VT: Variable Threshold
ASCORE
ASCORE: Adaptive Score Test
SKAT
SKAT: Sequence Kernel Association Test
RBT
RBT: Replication Based Test
TTEST
TTEST: Hotelling T2 Test
WST
WST: Weighted Score Test
SSUW
SSUW: Weighted Sum of Squared Score U Statistic
ORWSS
ORWSS: Odds Ratio Weighted Sum Statistic
AssotesteR-internal
Internal AssotesteR objects
UMINP
UMINP: Univariate minP (minimum p-value)
CMC
CMC: Combined Multivariate and Collapsing Method
ASSUW
ASSUW: Adaptive Sum of Squared Score U Statistic
ASSU
ASSU: Adaptive Sum of Squared Score U Statistic
AssotesteR-package
Statistical Tests for Genetic Association Studies
CAST
CAST: Cohort Allelic Sums Test
SUM
SUM: Sum Test
RVT1
RVT1: Rare Variant Test 1 for dichotomous traits
CARV
CARV: Comprehrensive Approach to Analyzing Rare Variants
MULTI
MULTI: Multiple Tests
GDBR
GDBR: Genomic Distance-Based Regression
SSU
SSU: Sum of Squared Score U Statistic
SCORE
SCORE: Score Test (from Logistic Regression)
CALPHA
CALPHA: C-alpha Score Test
RWAS
RWAS: Rare-Variant Weighted Aggregate Statistic
RARECOVER
RARECOVER Algorithm
WSS
WSS: Weighted Sum Statistic
genodata
genodata
ASUM
ASUM: Adaptive Sum Statistic
RVT2
RVT2: Rare Variant Test 2 for dichotomous traits