AssumpSure (version 1.1.4)

bacteria_for_correlation: Example Dataset for bacteria_for_correlation

Description

A small synthetic dataset included with AssumpSure for demonstrating correlation analysis of the compositional data in the Correlation tab.

Format

A CSV file with 126 rows and 21 columns:

sample_id

Sample identifier.

B_longum

Relative abundance of Bifidobacterium longum.

E_coli

Relative abundance of Escherichia coli.

B_bifidum

Relative abundance of Bifidobacterium bifidum.

B_breve

Relative abundance of Bifidobacterium breve.

k_pneumoniae

Relative abundance of Klebsiella pneumoniae.

S_salivarius

Relative abundance of Streptococcus salivarius.

S_lactarius

Relative abundance of Streptococcus lactarius.

E_faecium

Relative abundance of Enterococcus faecium.

S_mitis

Relative abundance of Streptococcus mitis.

S_peroris

Relative abundance of Streptococcus peroris.

S_pneumoniae

Relative abundance of Streptococcus pneumoniae.

S_lutetiensis

Relative abundance of Streptococcus lutetiensis.

k_variicola

Relative abundance of Klebsiella variicola.

B_fragilis

Relative abundance of Bacteroides fragilis.

S_equinus

Relative abundance of Streptococcus equinus.

C_sp

Relative abundance of Clostridium species.

P_cumminsii

Relative abundance of Peptoniphilus cumminsii.

T_bernardiae

Relative abundance of Trueperella bernardiae.

C_simulans

Relative abundance of Corynebacterium simulans.

G_SGB61413

Relative abundance of Granulicatella sp. SGB61413.

Details

The file is stored in inst/extdata/bacteria_for_correlation.csv.

All values are synthetic, created only for demonstration; no human data were used, and no ethical approval or consent is required.

Examples

read.csv(system.file("extdata", "bacteria_for_correlation.csv", package = "AssumpSure"))