calculateCountsForGeneLists


        Vector of gene uris which are being analysed for enrichment purposes and for which the factor-gene counts will be produced
    

genelist


        Background list for species of interest
    

genelist_bg


        Factor counts for species of interest
    

genecounts


    Internal function for counting genes in a gene list against the background


internal

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

calculateCountsForGeneLists function

Vector of gene uris which are being analysed for enrichment purposes and for which the factor-gene counts will be produced

Internal function for counting genes in a gene list against the background

calculateCountsForGeneLists: Internal function for counting genes in a gene list against the background

Description

Usage

Arguments

Value