getExperimentURIsForGeneId

geneid


      The location of the SPARQL endpoint - default value is live Atlas endpoint


endpoint


Get all of the experiment URIs which contain a gene, specified by an ENSEMBL ID, which has been reported as differentially expressed with said experiment. 


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getExperimentURIsForGeneId function

The location of the SPARQL endpoint - default value is live Atlas endpoint

Get all of the experiment URIs which contain a gene, specified by an ENSEMBL ID, which has been reported as differentially expressed with said experiment.

getExperimentURIsForGeneId: Get experiment URIs which contain a gene specified by ENSEMBL ID.

Description

Usage

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Examples