getExperimentsByDescription

searchterm


 Optional limit on number of returned results (default is everything)


limit


    The location of the SPARQL endpoint - default value is live Atlas endpoint


endpoint


Find experiments in Atlas based on a search string such as a "liver" or "cancer". Returns the experiment IDs plus the text in which the search string was found.


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getExperimentsByDescription function

Optional limit on number of returned results (default is everything)

The location of the SPARQL endpoint - default value is live Atlas endpoint

Find experiments in Atlas based on a search string such as a "liver" or "cancer". Returns the experiment IDs plus the text in which the search string was found.

Search for experiments in Atlas based on a string, e.g. liver, cancer etc.

Atlas Experiment ID of matched experiment to search term'

$experiment

Description of experiment which matched term

getExperimentsByDescription: Search for experiments in Atlas based on a string, e.g. liver, cancer etc.

Description

Usage

Arguments

Value

Examples