getGeneListFromPubmedid

searchid


        SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.     
    

endpoint


Get differentially expressed genes reported in an experiment in Atlas for which a given pubmed id is linked (assuming the data is in Atlas)


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getGeneListFromPubmedid function

SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.

Get differentially expressed genes reported in an experiment in Atlas for which a given pubmed id is linked (assuming the data is in Atlas)

getGeneListFromPubmedid: Get gene lists in Atlas for a given pubmed id (assuming the data is in Atlas)

Description

Usage

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Examples