getGeneUriFromName


        The common gene name by which to search
    

genename


        The URI of the taxon to search genes for, use function getTaxonURI to get the URI
    

taxon


        The location of the SPARQL endpoint - default value is live Atlas endpoint
    

endpoint


   Get the URI of an ENSEMBL gene based on a search by the common gene name.


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getGeneUriFromName function

The URI of the taxon to search genes for, use function getTaxonURI to get the URI

The location of the SPARQL endpoint - default value is live Atlas endpoint

Get the URI of an ENSEMBL gene based on a search by the common gene name.

getGeneUriFromName: Get URI of a gene based on the common gene name.

Description

Usage

Arguments

Value

Examples