getGenesForPathwayURI

pathwayuri


        SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.     
    

endpoint


Get genes that are associated with proteins which are in turn associated to a specific signalling pathway in Reactome.


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getGenesForPathwayURI function

SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.

Get genes that are associated with proteins which are in turn associated to a specific signalling pathway in Reactome.

getGenesForPathwayURI: Get genes associated with a signalling pathway from Reactome.

Description

Usage

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Value

Examples