getPathwayForGeneId

geneid


        SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.     
    

endpoint


Get signalling pathways from Reactome that are associated to a gene, via associated protein(s) which are in turn connected to said signalling patwhay(s) in Reactome.


Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

James Malone

AtlasRDF

Gene Expression Atlas query and gene set enrichment package.

getPathwayForGeneId function

SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.

Get signalling pathways from Reactome that are associated to a gene, via associated protein(s) which are in turn connected to said signalling patwhay(s) in Reactome.

getPathwayForGeneId: Get pathways associated to a gene.

Description

Usage

Arguments

Value

Examples